JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8F_chr15_28373664_28397021	0/0	a0014	636	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0015	636	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0016	636	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0017	629	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0018	636	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0019	636	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0020	636	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0021	636	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0022	636	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0023	636	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0024	636	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0025	643	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0026	636	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0027	636	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0028	636	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0029	636	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8G_chr15_28514611_28537971	0/0	a0000	0	5	5	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0001	648	53	5	23	4	11	10	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0002	648	15	1	3	5	3	3	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0003	648	8	4	4	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0004	648	3	3	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0005	648	3	0	1	0	0	2	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0006	648	2	2	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0007	648	2	0	2	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0008	648	1	0	1	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0009	648	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0010	648	1	0	0	0	1	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0011	648	1	0	0	1	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0012	641	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0013	648	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0014	648	1	0	0	0	1	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0015	648	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	a0016	648	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8H_chr15_30599028_30622752	0/0	a0001	632	197	11	42	113	6	25	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0002	632	35	6	13	10	1	5	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0003	632	28	2	11	6	4	5	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/1	a0004	632	20	12	2	2	2	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0005	632	15	13	1	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0006	632	11	10	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0007	632	9	8	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0008	632	8	4	4	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0009	632	8	8	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0010	632	5	4	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0011	632	5	0	0	3	0	2	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0012	632	5	5	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0013	632	5	0	1	0	0	4	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0014	81	3	0	2	0	1	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0015	632	3	0	0	3	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0016	632	2	0	0	2	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0017	632	2	0	0	0	0	2	copy fasta	GOLGA8H	chr15	30599028	30622752