JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8H_chr15_30599028_30622752	0/0	a0018	632	2	0	0	0	0	2	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0019	632	2	2	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0020	632	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0021	251	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0022	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0023	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0024	632	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0025	632	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0026	632	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0027	632	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0028	632	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0029	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0030	632	1	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0031	632	1	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0032	632	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0033	632	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0034	632	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0035	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0036	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0037	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0038	632	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0039	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0040	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	a0041	632	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8J_chr15_30077955_30101690	0/1	a0001	632	175	4	40	97	7	26	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0002	632	22	15	6	0	1	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0003	632	20	5	3	5	0	7	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0004	632	16	12	1	1	1	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0005	632	14	0	1	13	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0006	632	9	7	0	2	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0007	632	8	0	0	8	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0008	632	7	0	5	0	2	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0009	632	5	3	2	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0010	632	5	5	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0011	632	4	0	1	0	0	3	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0012	632	3	0	2	0	1	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0013	632	3	3	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0014	632	3	0	0	3	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0015	632	2	2	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0016	632	2	1	0	0	0	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0017	632	2	0	2	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0018	632	2	0	1	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0019	632	2	0	0	2	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0020	632	2	0	0	2	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0021	631	2	0	2	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0022	632	2	0	0	0	0	2	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0023	632	2	2	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0024	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0025	632	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0026	632	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690