Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKAP6_chr14_32324298_32842684	0/0	a0007	2319	4	2	1	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0008	2319	4	1	1	2	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0009	2319	3	3	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0010	2319	3	1	1	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0011	2319	2	0	1	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0012	2319	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0013	2319	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0014	2319	1	0	0	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0015	2319	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0016	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0017	2319	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0018	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0019	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0020	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0021	2319	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0022	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0023	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0024	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0025	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0026	2319	1	0	0	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0027	2319	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0028	2319	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0029	2319	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP7_chr6_131130467_131288532	1/1	a0001	348	223	51	31	114	7	18	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0002	348	50	15	17	1	7	10	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0003	348	10	10	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0004	348	7	0	5	0	2	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0005	348	5	5	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0006	348	4	3	1	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0007	348	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0008	348	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0009	348	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0010	348	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	a0011	348	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP8L_chr19_15375050_15423988	1/1	a0001	646	250	79	54	81	4	30	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	a0002	646	1	0	0	1	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	a0003	646	1	0	0	1	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	a0004	646	1	0	0	1	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	a0005	646	1	1	0	0	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8_chr19_15348385_15384787	1/1	a0001	692	273	80	59	87	8	37	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	a0002	692	8	8	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	a0003	692	1	0	0	0	0	1	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	a0004	692	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	a0005	692	1	0	0	1	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	a0006	692	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	a0007	692	1	0	1	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP9_chr7_91935862_92115673	0/0	a0001	3907	170	27	24	107	2	10	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0002	3908	72	16	16	28	2	10	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0003	3908	12	11	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0004	3908	10	8	2	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673