JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8J_chr15_30077955_30101690	0/0	a0027	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0028	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0029	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0030	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0031	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0032	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0033	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0034	632	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0035	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0036	632	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0037	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0038	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0039	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0040	632	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0041	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0042	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0043	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0044	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0045	631	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0046	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0047	632	1	0	0	0	0	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0048	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0049	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0050	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0051	632	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0052	632	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0053	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0054	395	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0055	631	1	0	0	0	0	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	a0056	632	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8K_chr15_32384599_32408292	0/0	a0001	631	115	4	23	79	2	7	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	1/0	a0002	630	79	7	15	42	3	11	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0003	631	44	18	6	20	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0004	630	22	15	4	1	0	2	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0005	631	12	0	1	7	2	2	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0006	631	12	0	8	0	0	4	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0007	631	10	1	1	3	1	4	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0008	630	9	9	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0009	631	7	0	0	7	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0010	631	6	4	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0011	630	5	1	2	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0012	632	5	0	0	5	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0013	630	4	1	0	2	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0014	630	3	0	2	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0015	632	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0016	631	3	0	0	2	1	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0017	630	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0018	630	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0019	631	2	0	2	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0020	630	2	2	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292