JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8K_chr15_32384599_32408292	0/0	a0021	630	2	0	0	0	0	2	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0022	630	2	1	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0023	631	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0024	632	2	0	0	0	0	2	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0025	632	2	2	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0026	632	2	0	0	1	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0027	631	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0028	631	2	2	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0029	630	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0030	630	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0031	630	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0032	630	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0033	630	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0034	631	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0035	630	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0036	630	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0037	631	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0038	631	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0039	631	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0040	630	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0041	630	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0042	631	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0043	630	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0044	630	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0045	631	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0046	631	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0047	631	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0048	632	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0049	631	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0050	631	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0051	631	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0052	632	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0053	630	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0054	630	1	0	0	0	1	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0055	630	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0056	631	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0057	631	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0058	631	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0059	631	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0060	631	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	a0061	630	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8M_chr15_28693583_28717421	0/0	a0001	632	102	26	14	36	9	17	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0002	632	93	1	13	75	0	4	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/1	a0003	632	62	13	22	17	4	5	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0004	632	20	0	1	17	0	2	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0005	632	14	0	8	6	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0006	632	11	0	0	10	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0007	632	10	2	2	3	0	3	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0008	632	7	2	2	2	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0009	632	6	5	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421