JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8M_chr15_28693583_28717421	0/0	a0060	632	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0061	632	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0062	632	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0063	632	1	0	0	0	1	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0064	632	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0065	632	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0066	632	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0067	632	1	0	0	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0068	632	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0069	632	1	0	0	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0070	632	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0071	632	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0072	632	1	0	0	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0073	632	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0074	632	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0075	632	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	a0076	632	1	0	0	0	1	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8N_chr15_32588456_32612237	0/0	a0001	632	55	5	9	28	3	10	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0002	632	50	3	15	25	1	6	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0003	632	37	7	13	9	1	7	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0004	632	20	7	5	4	0	4	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0005	389	13	2	1	6	1	3	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0006	632	11	11	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0007	632	8	0	1	6	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0008	631	8	6	2	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0009	632	5	3	0	0	2	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0010	632	5	5	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0011	632	4	2	0	0	0	2	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0012	632	4	1	1	1	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0013	632	4	0	1	2	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0014	632	4	4	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0015	632	3	2	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0016	632	2	0	1	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0017	632	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0018	632	2	0	2	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0019	632	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0020	632	2	1	0	0	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0021	632	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0022	631	2	0	0	0	2	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0023	632	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0024	632	2	1	0	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0025	632	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0026	632	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0027	632	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0028	632	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0029	631	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0030	632	1	0	0	0	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0031	632	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0032	632	1	0	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0033	632	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237