JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8N_chr15_32588456_32612237	0/0	a0034	632	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0035	632	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0036	632	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0037	631	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0038	631	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0039	631	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0040	632	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0041	632	1	0	0	0	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0042	632	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0043	632	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0044	632	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0045	632	1	0	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0046	632	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0047	632	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0048	632	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0049	632	1	0	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0050	632	1	0	0	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0051	632	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0052	632	1	0	0	0	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0053	632	1	0	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0054	632	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0055	631	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	a0056	632	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8O_chr15_32436914_32460634	0/0	a0001	632	60	2	12	35	3	8	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0002	632	39	3	9	18	4	5	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0003	632	14	1	10	2	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0004	632	12	0	0	7	1	4	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0005	632	9	4	3	0	0	2	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0006	632	9	8	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0007	631	6	0	1	5	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0008	632	6	6	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0009	632	5	1	0	3	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0010	632	5	0	2	0	1	2	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0011	632	3	0	0	3	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0012	631	3	3	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0013	632	3	3	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0014	632	2	0	0	2	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0015	632	2	0	0	0	0	2	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0016	632	2	2	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0017	631	2	0	2	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0018	632	2	2	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0019	632	2	2	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0020	632	2	2	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0021	632	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0022	632	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0023	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0024	632	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0025	632	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0026	631	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0027	631	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634