JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8O_chr15_32436914_32460634	0/0	a0028	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0029	632	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0030	507	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0031	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0032	632	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0033	482	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0034	632	1	0	0	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0035	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0036	632	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0037	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0038	632	1	0	0	0	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0039	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0040	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0041	632	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0042	632	1	0	0	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0043	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0044	632	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0045	632	1	0	0	0	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	a0046	632	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8Q_chr15_30547050_30570684	0/0	a0001	632	73	6	16	47	0	4	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0002	631	18	12	2	4	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0003	632	8	0	0	8	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0004	632	4	3	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0005	632	3	0	0	3	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0006	632	3	2	0	0	0	1	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0007	632	2	2	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0008	632	2	0	1	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0009	631	2	2	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0010	631	2	0	1	0	0	1	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0011	631	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0012	632	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0013	632	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0014	632	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0015	632	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0016	631	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0017	631	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0018	631	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	a0019	632	1	1	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8R_chr15_30395562_30419260	0/0	a0001	631	107	19	19	58	3	8	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0002	631	13	3	2	8	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0003	631	6	1	1	1	1	2	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0004	631	5	3	0	2	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0005	631	5	0	3	2	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0006	631	5	2	2	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0007	631	4	4	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0008	631	3	2	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0009	631	3	0	0	3	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0010	631	3	0	2	0	0	1	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0011	631	3	0	0	3	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0012	631	3	0	0	0	0	3	copy fasta	GOLGA8R	chr15	30395562	30419260