JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8R_chr15_30395562_30419260	0/0	a0013	631	2	1	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0014	631	2	0	1	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0015	631	2	2	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0016	631	2	2	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0017	631	2	1	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0018	631	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0019	632	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0020	631	1	0	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0021	389	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0022	631	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0023	631	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0024	631	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0025	631	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0026	631	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0027	631	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0028	631	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0029	631	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0030	631	1	0	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	a0031	631	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8S_chr15_23349748_23373341	0/0	a0001	638	151	1	23	109	2	16	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0002	482	43	0	2	40	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0003	638	32	13	3	13	0	3	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/1	a0004	638	21	11	5	0	3	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0005	638	17	7	8	0	2	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	1/0	a0006	638	11	10	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0007	638	7	6	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0008	638	7	0	7	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0009	638	6	1	1	0	2	2	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0010	638	5	1	0	0	1	3	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0011	638	5	0	2	0	2	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0012	638	5	3	0	0	0	2	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0013	481	5	0	2	0	0	3	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0014	638	4	0	0	2	1	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0015	638	4	0	0	2	2	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0016	482	4	0	0	3	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0017	645	3	3	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0018	638	3	2	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0019	638	3	3	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0020	638	3	2	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0021	482	3	0	0	2	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0022	482	3	0	0	3	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0023	638	3	0	0	3	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0024	489	2	0	2	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0025	645	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0026	645	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0027	638	2	1	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0028	638	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0029	482	2	0	1	0	1	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0030	482	2	0	0	2	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0031	638	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341