JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8S_chr15_23349748_23373341	0/0	a0032	638	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0033	638	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0034	482	2	0	1	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0035	638	2	0	2	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0036	638	2	1	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0037	638	2	0	0	2	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0038	638	2	0	1	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0039	482	2	0	0	2	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0040	638	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0041	645	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0042	645	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0043	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0044	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0045	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0046	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0047	638	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0048	645	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0049	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0050	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0051	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0052	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0053	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0054	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0055	645	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0056	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0057	638	1	0	0	0	1	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0058	638	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0059	638	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0060	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0061	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0062	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0063	638	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0064	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0065	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0066	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0067	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0068	638	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0069	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0070	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0071	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0072	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0073	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0074	638	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0075	638	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0076	638	1	0	0	0	1	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0077	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0078	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0079	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0080	482	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0081	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341