JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8S_chr15_23349748_23373341	0/0	a0082	638	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0083	638	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0084	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0085	637	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0086	638	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0087	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0088	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	a0089	482	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8T_chr15_30130051_30153748	0/1	a0001	631	133	1	25	82	8	16	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0002	631	23	0	3	19	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0003	632	13	1	3	5	0	4	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0004	631	13	2	4	3	0	4	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0005	631	13	0	3	8	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0006	631	13	0	8	3	1	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0007	631	10	2	3	5	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0008	632	7	0	0	7	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0009	631	6	5	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0010	631	5	5	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0011	631	3	0	0	3	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0012	631	3	3	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0013	631	3	0	1	0	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0014	632	2	0	0	0	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0015	632	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0016	631	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0017	631	2	0	2	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0018	631	2	0	1	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0019	632	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0020	630	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0021	631	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0022	630	2	0	0	0	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0023	631	2	0	2	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0024	631	2	0	0	2	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0025	631	2	0	0	2	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0026	631	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0027	631	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0028	632	1	0	0	0	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0029	631	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0030	631	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0031	631	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0032	630	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0033	631	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0034	631	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0035	631	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0036	631	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0037	631	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0038	631	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0039	631	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0040	631	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0041	631	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0042	631	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748