JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8T_chr15_30130051_30153748	0/0	a0043	631	1	0	0	0	1	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0044	631	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0045	631	1	0	0	0	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0046	631	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	a0047	631	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGB1_chr3_121658201_121754741	1/0	a0001	3264	149	37	29	66	3	13	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0002	3264	55	2	1	48	0	4	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/1	a0003	3264	45	12	10	13	4	5	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0004	3264	41	18	3	14	0	6	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0005	3264	33	1	17	5	6	4	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0006	3264	6	6	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0007	3263	6	5	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0008	3264	4	0	0	4	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0009	3264	4	0	0	4	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0010	3264	3	2	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0011	3264	2	0	2	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0012	3264	2	0	0	0	0	2	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0013	3264	2	0	2	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0014	3264	1	0	0	0	0	1	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0015	3264	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0016	3264	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0017	3264	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0018	3264	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0019	3264	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0020	3264	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0021	3264	1	0	0	0	0	1	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0022	3264	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0023	3264	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0024	3264	1	0	0	0	0	1	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0025	3264	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0026	3264	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0027	3264	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0028	3264	1	0	0	0	0	1	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0029	3264	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0030	3264	1	0	0	0	1	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	a0031	3264	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLIM4_chr3_168003689_168100924	1/1	a0001	696	189	60	49	36	14	28	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	a0002	696	21	20	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	a0003	696	8	0	0	6	0	2	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	a0004	696	6	6	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	a0005	696	3	0	1	2	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	a0006	696	1	0	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLM1_chr9_86021146_86104558	1/1	a0001	401	204	44	49	66	11	32	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	a0002	401	82	19	5	52	0	6	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	a0003	401	23	21	2	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	a0004	401	2	2	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	a0005	401	1	0	0	0	1	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	a0006	401	1	0	0	0	0	1	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	a0007	401	1	0	0	0	0	1	copy fasta	GOLM1	chr9	86021146	86104558
GOLM2_chr15_44283719_44420758	1/1	a0001	436	146	58	18	54	6	8	copy fasta	GOLM2	chr15	44283719	44420758