Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKAP9_chr7_91935862_92115673	0/1	a0005	3907	9	0	2	3	0	3	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0006	3908	4	4	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0007	3908	4	4	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0008	3908	3	3	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0009	3908	2	2	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0010	3908	2	0	0	1	0	1	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0011	3908	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0012	3908	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0013	3908	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0014	3908	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0015	3908	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0016	3907	1	0	0	1	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0017	3907	1	0	0	0	0	1	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0018	3907	1	0	0	0	0	1	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	1/0	a0019	3907	1	0	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0020	3907	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0021	3907	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0022	3907	1	0	0	1	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0023	3907	1	0	0	1	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0024	3907	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0025	3907	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0026	3908	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0027	3907	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	a0028	3908	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKIP1_chr11_8906189_8925079	1/1	a0001	210	372	87	45	191	12	35	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	a0002	210	31	3	15	0	4	9	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	a0003	210	6	6	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	a0004	210	5	0	2	0	0	3	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	a0005	210	2	2	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	a0006	210	1	0	0	0	0	1	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	a0007	210	1	0	0	1	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	a0008	210	1	1	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	a0009	210	1	1	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIRIN1_chr1_38986276_39011059	1/1	a0001	192	425	98	72	191	18	44	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	a0002	192	1	0	0	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN2_chr6_87669860_87707233	1/1	a0001	203	406	90	76	174	16	48	copy fasta	AKIRIN2	chr6	87669860	87707233
AKNAD1_chr1_108810901_108862094	0/0	a0001	836	140	27	28	76	1	8	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/1	a0002	836	74	21	20	14	7	11	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0003	836	38	15	5	16	2	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0004	612	31	1	6	22	1	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0005	836	24	2	6	15	1	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	1/0	a0006	836	13	6	0	3	2	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0007	836	13	1	3	6	1	2	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0008	836	10	1	3	4	0	2	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0009	836	6	6	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0010	836	5	2	0	2	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0011	836	5	5	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0012	836	5	5	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0013	836	4	0	0	4	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0014	836	4	1	0	0	0	3	copy fasta	AKNAD1	chr1	108810901	108862094