JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLM2_chr15_44283719_44420758	0/0	a0002	436	2	2	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	a0003	435	2	0	0	2	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLPH3L_chr1_150641230_150702154	1/1	a0001	285	344	94	53	144	16	35	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	a0002	285	2	0	0	1	0	1	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	a0003	285	1	0	1	0	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	a0004	285	1	0	0	1	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3_chr5_32119716_32179319	1/1	a0001	298	379	86	70	169	8	44	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	a0002	298	1	0	0	1	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLT1A_chr1_204193163_204218988	1/1	a0001	132	414	100	80	180	12	40	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1B_chr12_21496789_21523408	1/1	a0001	138	427	91	68	198	18	50	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	a0002	138	3	3	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GON4L_chr1_155744659_155862214	1/1	a0001	2241	134	66	22	28	3	13	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0002	2241	66	8	13	29	3	13	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0003	2241	6	6	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0004	2241	2	2	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0005	2241	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0006	2241	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0007	2241	1	0	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0008	2241	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0009	2241	1	0	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0010	2241	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0011	2241	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0012	2241	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0013	2241	1	0	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	a0014	2241	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON7_chr14_93197894_93212065	0/1	a0001	100	411	92	78	176	18	46	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	a0002	100	1	1	0	0	0	0	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	a0003	100	1	1	0	0	0	0	copy fasta	GON7	chr14	93197894	93212065
GOPC_chr6_117555269_117607511	1/1	a0001	462	373	82	64	177	16	32	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	a0002	461	7	7	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	a0003	462	1	0	0	1	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	a0004	462	1	1	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GORAB_chr1_170527166_170558834	0/0	a0001	369	236	49	36	123	5	23	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	1/1	a0002	369	116	43	30	18	5	18	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	a0003	369	2	0	0	0	2	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	a0004	369	1	0	0	0	0	1	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	a0005	369	1	0	0	1	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORASP1_chr3_39091599_39112627	1/1	a0001	440	356	81	68	158	16	31	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	a0002	440	45	12	2	30	0	1	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	a0003	440	2	1	1	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	a0004	440	2	2	0	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	a0005	440	1	0	0	1	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	a0006	440	1	0	1	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	a0007	440	1	0	0	1	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP2_chr2_170924253_170972130	1/1	a0001	452	301	85	55	107	16	36	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	a0002	452	68	0	9	53	0	6	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	a0003	452	8	6	2	0	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	a0004	452	2	0	0	2	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	a0005	452	1	0	0	1	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	a0006	452	1	0	0	1	0	0	copy fasta	GORASP2	chr2	170924253	170972130