JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GORASP2_chr2_170924253_170972130	0/0	a0007	452	1	1	0	0	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GOSR1_chr17_30472408_30532592	1/1	a0001	248	304	86	66	100	14	36	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	a0002	248	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	a0003	248	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR2_chr17_46918160_46947020	1/0	a0001	212	248	53	55	108	7	24	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/1	a0002	212	157	38	24	72	7	15	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	a0003	212	3	0	2	0	0	1	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	a0004	106	1	0	0	1	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	a0005	212	1	0	1	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	a0006	212	1	0	0	1	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	a0007	212	1	1	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOT1L1_chr8_37929281_37945124	1/1	a0001	421	387	57	71	200	14	43	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	a0002	421	28	28	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	a0003	387	9	0	0	9	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	a0004	421	4	4	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	a0005	421	2	0	1	0	0	1	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	a0006	421	1	0	1	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	a0007	421	1	0	1	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	a0008	421	1	1	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	a0009	421	1	0	0	1	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1_chr10_99391870_99435624	1/1	a0001	413	347	91	63	159	8	24	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	a0002	413	4	0	1	3	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	a0003	413	2	0	0	2	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	a0004	413	1	1	0	0	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT2_chr16_58702131_58739316	0/0	a0001	430	264	71	46	117	4	26	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	1/1	a0002	430	105	11	14	65	5	8	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	a0003	430	17	4	7	1	2	3	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	a0004	430	6	6	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	a0005	430	3	0	1	0	0	2	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	a0006	430	2	0	0	0	1	1	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	a0007	430	1	0	0	1	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	a0008	430	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	a0009	438	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GP1BA_chr17_4927277_4940023	0/1	a0001	639	262	49	51	117	12	32	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0002	626	66	4	3	48	1	10	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0003	652	46	19	16	8	1	2	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0004	665	17	0	0	17	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	1/0	a0005	652	10	7	2	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0006	626	8	0	0	8	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0007	652	3	3	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0008	639	2	2	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0009	626	2	2	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0010	639	2	2	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0011	613	2	0	2	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0012	652	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0013	652	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0014	639	1	0	0	1	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	a0015	444	1	0	0	1	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BB_chr22_19718539_19729771	0/0	a0000	0	1	1	0	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	1/1	a0001	206	406	92	81	169	18	44	copy fasta	GP1BB	chr22	19718539	19729771