JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPA33_chr1_167047836_167095377	0/0	a0003	319	11	11	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	a0004	319	1	0	0	1	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	a0005	319	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPAA1_chr8_144077634_144091216	1/1	a0001	621	317	81	71	111	16	36	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0002	621	8	8	0	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0003	621	3	2	0	0	0	1	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0004	621	2	2	0	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0005	621	2	2	0	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0006	621	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0007	621	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0008	621	1	1	0	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0009	621	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0010	621	1	0	0	0	0	1	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	a0011	621	1	0	1	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPALPP1_chr13_44984538_45035305	1/0	a0001	340	342	87	60	155	8	31	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	a0002	340	2	0	2	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/1	a0003	340	1	0	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	a0004	340	1	0	0	0	0	1	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	a0005	340	1	0	0	1	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	a0006	340	1	1	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPAM_chr10_112144865_112188765	0/1	a0001	828	180	34	29	91	9	16	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	1/0	a0002	828	96	3	35	41	6	10	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	a0003	828	90	29	12	37	3	9	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	a0004	828	4	3	1	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	a0005	828	4	1	1	0	0	2	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	a0006	828	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	a0007	828	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	a0008	828	1	0	0	0	0	1	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	a0009	828	1	0	0	1	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPANK1_chr6_31656228_31669997	0/0	a0000	0	1	0	0	1	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/1	a0001	356	324	62	65	153	12	31	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	a0002	356	46	5	4	29	1	7	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	a0003	356	44	18	8	5	5	8	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	a0004	356	8	1	1	6	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	a0005	356	3	3	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	a0006	356	3	3	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	a0007	40	2	0	0	2	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	a0008	314	1	0	0	1	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	a0009	356	1	0	0	1	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPAT2_chr2_96016946_96039916	1/1	a0001	801	405	92	69	189	12	41	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	a0002	801	7	1	5	0	0	1	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	a0003	801	3	0	0	3	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	a0004	801	2	0	0	0	0	2	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	a0005	801	1	1	0	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	a0006	801	1	1	0	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	a0007	801	1	0	1	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	a0008	801	1	0	1	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	a0009	801	1	1	0	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT3_chr4_83531108_83610875	1/1	a0001	434	327	92	45	140	11	37	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	a0002	434	5	0	3	0	1	1	copy fasta	GPAT3	chr4	83531108	83610875