JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPAT3_chr4_83531108_83610875	0/0	a0003	434	2	0	2	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT4_chr8_41573200_41630001	1/1	a0001	456	408	86	64	196	12	48	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	a0002	456	2	2	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPATCH11_chr2_37079518_37104244	1/1	a0001	263	426	90	76	202	16	40	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	a0002	263	4	0	0	0	2	2	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	a0003	263	2	2	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	a0004	263	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	a0005	263	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH1_chr19_33076181_33135542	0/0	a0001	931	195	62	20	83	4	26	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0002	931	74	15	20	32	5	2	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0003	931	55	0	5	50	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	1/1	a0004	931	37	2	14	0	7	12	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0005	931	8	8	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0006	931	4	4	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0007	931	3	3	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0008	931	1	0	1	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0009	931	1	0	0	1	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0010	931	1	1	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	a0011	931	1	1	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH2L_chr14_76146922_76219343	1/1	a0001	482	399	74	68	202	12	41	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	a0002	482	1	0	0	0	0	1	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	a0003	482	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	a0004	482	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2_chr1_217421992_217636090	1/1	a0001	528	172	67	39	36	6	22	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	a0002	528	10	0	1	5	0	4	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	a0003	528	5	5	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	a0004	528	1	0	0	1	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH3_chr1_26885488_26905467	1/1	a0001	525	288	91	61	76	18	40	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	a0002	525	1	0	0	1	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	a0003	525	1	1	0	0	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	a0004	525	1	0	1	0	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	a0005	525	1	0	0	1	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH8_chr17_44390281_44508406	1/0	a0001	1502	316	81	59	134	9	32	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/1	a0002	1502	3	0	0	0	1	1	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	a0003	1502	2	0	2	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	a0004	1502	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	a0005	1502	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	a0006	1502	1	0	0	0	0	1	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	a0007	1502	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	a0008	1502	1	0	1	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPBAR1_chr2_218256015_218268861	1/1	a0001	330	397	92	78	174	14	37	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	a0002	330	2	0	0	1	0	1	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	a0003	330	2	0	0	0	0	2	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	a0004	330	1	0	0	1	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	a0005	330	1	1	0	0	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	a0006	330	1	0	0	1	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	a0007	330	1	1	0	0	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	a0008	330	1	0	0	1	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBP1L1_chr1_45622304_45691533	1/1	a0001	474	283	71	59	111	12	28	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	a0002	474	7	6	1	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533