JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPBP1L1_chr1_45622304_45691533	0/0	a0003	474	1	1	0	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	a0004	474	1	0	0	1	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1_chr5_57169059_57269673	1/1	a0001	473	281	92	61	73	10	43	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	a0002	473	3	0	2	0	0	1	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	a0003	473	2	2	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	a0004	467	1	0	0	1	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	a0005	253	1	0	0	1	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	a0006	473	1	0	1	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	a0007	473	1	0	0	1	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPC1_chr2_240430663_240473076	0/1	a0001	558	242	82	61	58	12	28	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	1/0	a0002	558	129	9	21	77	5	16	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0003	558	8	0	0	8	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0004	558	5	5	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0005	558	4	0	0	2	0	2	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0006	558	2	0	0	0	1	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0007	558	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0008	558	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0009	558	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0010	558	1	0	0	0	0	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0011	558	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0012	558	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0013	558	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	a0014	558	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC2_chr7_100164606_100182381	1/1	a0001	579	394	87	64	173	18	50	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	a0002	583	1	0	0	1	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	a0003	571	1	0	0	1	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	a0004	579	1	0	1	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	a0005	579	1	0	0	1	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	a0006	579	1	0	1	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	a0007	579	1	1	0	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC3_chrX_133530745_133990594	1/1	a0001	580	150	38	23	65	5	17	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	a0002	580	1	0	0	0	0	1	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	a0003	66	1	0	0	1	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC4_chrX_133295103_133420489	1/1	a0001	556	120	21	20	62	4	11	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	a0002	556	97	27	15	36	3	16	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	a0003	136	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	a0004	162	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	a0005	556	1	0	0	0	0	1	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	a0006	54	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC5_chr13_91393621_92872237	0/0	a0001	572	33	27	4	0	0	2	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	a0002	572	4	4	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	a0003	572	3	3	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	a0004	572	1	1	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	a0005	572	1	1	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC6_chr13_93221807_94413020	0/0	a0001	555	61	44	11	1	1	4	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	a0002	555	12	2	4	5	1	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	a0003	555	2	1	1	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	a0004	555	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPCPD1_chr20_5539439_5616006	1/1	a0001	672	332	71	50	160	13	36	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	a0002	672	52	18	5	26	1	2	copy fasta	GPCPD1	chr20	5539439	5616006