JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPNMB_chr7_23241775_23280108	0/0	a0003	560	4	3	1	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0004	560	4	4	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0005	560	3	2	1	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0006	560	2	0	2	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0007	560	1	1	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0008	560	1	0	1	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0009	560	1	0	0	0	0	1	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0010	560	1	1	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0011	560	1	0	0	1	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPR101_chrX_137018929_137038995	1/0	a0001	508	162	38	32	72	4	15	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/1	a0002	508	63	2	11	40	5	4	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	a0003	508	57	17	11	17	2	10	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	a0004	508	18	14	1	3	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	a0005	508	2	1	1	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	a0006	508	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	a0007	71	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	a0008	508	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	a0009	508	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR107_chr9_130048906_130145164	1/1	a0001	552	293	73	63	108	10	37	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	a0002	552	9	2	1	0	1	5	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	a0003	552	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	a0004	552	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	a0005	552	1	0	0	0	1	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	a0006	552	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR108_chr19_6724914_6742580	0/1	a0001	543	361	77	61	166	18	38	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	1/0	a0002	543	39	13	12	6	0	7	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	a0003	543	24	6	6	10	0	2	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	a0004	543	4	0	0	4	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	a0005	543	2	0	2	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	a0006	543	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	a0007	543	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	a0008	543	1	0	0	0	0	1	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	a0009	543	1	0	1	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR119_chrX_130374449_130390674	1/1	a0001	335	297	70	55	132	11	27	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	a0002	335	3	3	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	a0003	337	1	0	0	0	0	1	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	a0004	335	1	1	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR12_chr13_26750200_26765786	1/1	a0001	334	378	94	72	159	15	36	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	a0002	334	2	2	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	a0003	334	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	a0004	334	1	0	0	0	1	0	copy fasta	GPR12	chr13	26750200	26765786
GPR132_chr14_105044395_105070430	1/1	a0001	380	399	87	64	188	14	44	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	a0002	380	2	2	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	a0003	380	1	0	1	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	a0004	380	1	0	0	1	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	a0005	380	1	0	1	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	a0006	380	1	0	0	1	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	a0007	380	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR135_chr14_59455759_59470380	0/1	a0001	494	166	53	39	46	8	19	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	1/0	a0002	494	145	11	32	76	6	19	copy fasta	GPR135	chr14	59455759	59470380