JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR135_chr14_59455759_59470380	0/0	a0003	375	15	12	3	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0004	494	11	2	4	3	2	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0005	494	9	0	0	9	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0006	494	7	0	0	7	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0007	494	6	6	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0008	494	3	3	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0009	494	1	1	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0010	375	1	1	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0011	494	1	1	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0012	494	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0013	494	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	a0014	494	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR137B_chr1_236137539_236213907	1/1	a0001	399	383	91	69	171	10	40	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	a0002	200	1	0	1	0	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	a0003	399	1	0	0	1	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	a0004	399	1	1	0	0	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137C_chr14_52547836_52642713	0/1	a0001	429	204	52	22	100	5	24	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	a0002	429	88	13	20	38	7	10	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	1/0	a0003	429	26	16	2	6	0	1	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	a0004	429	24	0	3	18	0	3	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	a0005	429	1	0	0	1	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	a0006	429	1	0	1	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	a0007	166	1	0	0	1	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	a0008	422	1	1	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137_chr11_64280848_64294494	1/1	a0001	396	391	93	76	162	16	42	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	a0002	396	5	0	0	5	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	a0003	396	3	0	0	3	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	a0004	396	1	1	0	0	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR139_chr16_20023239_20078890	1/1	a0001	353	361	92	47	158	14	48	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	a0002	353	2	0	0	2	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	a0003	353	1	0	1	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR141_chr7_37678766_37748835	1/1	a0001	305	391	90	60	181	12	46	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	a0002	305	5	0	0	5	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	a0003	305	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	a0004	305	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	a0005	305	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	a0006	305	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR142_chr17_74362506_74377600	0/1	a0001	374	422	77	75	209	16	44	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	1/0	a0002	374	14	9	2	0	0	2	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0003	374	4	4	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0004	374	3	0	0	3	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0005	374	2	0	0	2	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0006	374	1	1	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0007	374	1	0	0	1	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0008	374	1	0	0	1	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0009	374	1	0	1	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0010	374	1	1	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0011	374	1	1	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	a0012	374	1	1	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR143_chrX_9720346_9770847	1/1	a0001	404	263	70	49	101	13	28	copy fasta	GPR143	chrX	9720346	9770847