Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKNAD1_chr1_108810901_108862094	0/0	a0015	836	3	1	2	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0016	836	3	0	2	0	1	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0017	836	3	0	0	1	0	2	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0018	836	2	0	0	2	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0019	836	1	0	1	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0020	836	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0021	836	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0022	836	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0023	836	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0024	836	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0025	836	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0026	836	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0027	836	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0028	836	1	0	0	0	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0029	836	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0030	836	1	0	1	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0031	612	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0032	836	1	0	1	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	a0033	836	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNA_chr9_114329156_114392982	0/1	a0001	1439	119	13	22	61	8	14	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0002	1439	114	15	27	58	1	13	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0003	1439	27	17	2	5	0	3	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0004	1439	26	0	12	6	5	3	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0005	1439	19	16	3	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	1/0	a0006	1439	17	1	3	8	2	2	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0007	1439	8	0	1	7	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0008	1439	8	8	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0009	1439	7	6	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0010	1439	7	0	1	4	2	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0011	1439	7	7	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0012	1439	4	4	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0013	1439	4	0	0	4	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0014	1439	3	2	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0015	1439	3	3	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0016	1439	3	0	0	3	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0017	1439	2	1	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0018	1439	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0019	1439	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0020	1439	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0021	1439	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0022	1439	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0023	1439	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0024	1439	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0025	1439	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0026	1439	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	a0027	1439	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKR1A1_chr1_45545826_45575049	1/1	a0001	325	343	79	70	143	12	37	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	a0002	325	3	0	3	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	a0003	325	2	1	1	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	a0004	325	1	1	0	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049