JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR143_chrX_9720346_9770847	0/0	a0002	404	4	4	0	0	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	a0003	332	1	0	0	1	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	a0004	404	1	1	0	0	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	a0005	143	1	0	0	1	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR146_chr7_1039546_1064261	1/1	a0001	333	404	94	71	189	11	37	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	a0002	333	21	4	8	0	3	6	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	a0003	333	2	0	0	0	0	2	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	a0004	333	2	1	0	0	1	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	a0005	333	1	0	0	0	1	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	a0006	333	1	0	0	1	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	a0007	333	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	a0008	328	1	0	1	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	a0009	333	1	0	0	0	0	1	copy fasta	GPR146	chr7	1039546	1064261
GPR148_chr2_130724070_130735336	0/1	a0001	347	302	57	56	145	12	31	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0002	347	20	19	1	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	1/0	a0003	347	15	6	5	1	2	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0004	347	10	0	0	9	0	1	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0005	347	4	4	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0006	347	4	4	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0007	347	2	2	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0008	347	1	1	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0009	347	1	1	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0010	347	1	0	0	1	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0011	347	1	1	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	a0012	347	1	1	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR149_chr3_154329943_154435190	1/1	a0001	731	330	70	68	148	10	32	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	a0002	731	2	2	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	a0003	731	1	0	0	1	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	a0004	731	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	a0005	731	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	a0006	731	1	0	0	1	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR150_chr5_95615087_95627142	1/0	a0001	434	379	90	71	167	12	38	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0002	434	58	2	10	33	5	8	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0003	434	2	0	0	2	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0004	434	2	2	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0005	434	1	1	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0006	434	1	0	0	1	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0007	355	1	0	0	0	1	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/1	a0008	434	1	0	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0009	434	1	0	0	1	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0010	434	1	0	1	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	a0011	434	1	1	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR151_chr5_146508144_146521190	0/1	a0001	419	194	25	17	134	6	11	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	1/0	a0002	419	159	49	39	31	8	31	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	a0003	419	41	17	4	20	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	a0004	419	18	6	7	0	0	5	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	a0005	419	3	0	0	3	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	a0006	98	2	0	1	0	0	1	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	a0007	419	1	1	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	a0008	419	1	0	0	1	0	0	copy fasta	GPR151	chr5	146508144	146521190