JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR151_chr5_146508144_146521190	0/0	a0009	419	1	0	0	1	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR152_chr11_67446301_67457729	1/1	a0001	470	277	46	69	121	14	25	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0002	470	42	41	1	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0003	470	34	0	1	33	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0004	470	1	1	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0005	470	1	0	1	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0006	470	1	1	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0007	470	1	0	0	0	0	1	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0008	470	1	0	0	1	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0009	470	1	0	0	1	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	a0010	470	1	1	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR153_chr1_6242353_6266098	0/0	a0001	609	196	51	42	70	8	25	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	1/1	a0002	609	112	27	17	44	8	14	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0003	609	38	0	0	38	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0004	609	11	9	2	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0005	609	3	3	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0006	593	3	0	0	3	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0007	609	2	0	0	2	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0008	609	2	2	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0009	609	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0010	609	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0011	609	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0012	609	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0013	609	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0014	609	1	0	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	a0015	609	1	0	0	0	0	1	copy fasta	GPR153	chr1	6242353	6266098
GPR155_chr2_174426571_174492029	1/1	a0001	870	295	89	62	84	14	44	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	a0002	870	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	a0003	870	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	a0004	376	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	a0005	870	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	a0006	870	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR156_chr3_120160478_120290222	0/1	a0001	814	260	62	62	93	8	34	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	1/0	a0002	814	31	9	6	10	2	3	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0003	814	6	6	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0004	814	4	4	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0005	814	3	3	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0006	814	3	0	0	3	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0007	814	2	1	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0008	814	2	2	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0009	814	2	0	0	2	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0010	814	2	0	0	2	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0011	814	1	0	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0012	814	1	1	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0013	814	1	0	0	1	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0014	814	1	0	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0015	814	1	0	0	0	0	1	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0016	814	1	0	0	1	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	a0017	814	1	0	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR157_chr1_9095305_9134102	1/1	a0001	335	259	59	42	114	9	33	copy fasta	GPR157	chr1	9095305	9134102