JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR157_chr1_9095305_9134102	0/0	a0002	335	60	0	18	28	3	11	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0003	335	59	13	10	32	0	4	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0004	335	10	4	3	3	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0005	335	9	7	1	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0006	335	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0007	335	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0008	335	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0009	335	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0010	335	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0011	335	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	a0012	335	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR158_chr10_25170001_25607229	0/0	a0001	1215	62	25	6	27	1	3	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/1	a0002	1215	46	28	6	2	3	6	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0003	1215	17	3	4	4	0	6	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	1/0	a0004	1215	15	0	3	8	2	1	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0005	1215	6	6	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0006	1215	4	3	1	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0007	1215	3	0	0	3	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0008	1215	2	0	0	2	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0009	1215	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0010	1215	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0011	1215	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0012	1215	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0013	1215	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0014	1215	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	a0015	1215	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR15LG_chr10_84168801_84190294	1/1	a0001	81	450	98	78	209	17	46	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	a0002	81	7	0	0	7	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	a0003	81	1	0	0	0	1	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15_chr3_98526978_98539681	1/1	a0001	360	345	85	57	150	13	38	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	a0002	360	110	1	24	76	3	6	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	a0003	360	5	4	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	a0004	360	5	5	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	a0005	360	2	1	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	a0006	214	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	a0007	360	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	a0008	360	1	0	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR160_chr3_170032995_170090392	1/1	a0001	338	349	86	72	151	10	28	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	a0002	338	3	0	0	3	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	a0003	338	2	2	0	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	a0004	338	1	0	0	0	0	1	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	a0005	338	1	0	0	0	0	1	copy fasta	GPR160	chr3	170032995	170090392
GPR161_chr1_168074542_168141930	1/1	a0001	529	338	85	64	140	15	32	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	a0002	529	1	0	0	0	1	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	a0003	529	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR162_chr12_6816821_6832421	1/1	a0001	588	412	93	61	203	11	42	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0002	588	31	1	23	0	4	3	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0003	588	3	0	0	0	0	3	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0004	588	3	0	0	3	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0005	588	2	0	0	2	0	0	copy fasta	GPR162	chr12	6816821	6832421