JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR162_chr12_6816821_6832421	0/0	a0006	588	2	1	0	0	1	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0007	588	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0008	588	1	1	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0009	588	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0010	588	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	a0011	588	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR171_chr3_151192832_151208216	1/1	a0001	319	415	92	76	188	17	40	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	a0002	319	33	0	0	30	1	2	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	a0003	319	1	0	0	1	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	a0004	319	1	0	0	1	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR173_chrX_53043789_53085615	0/0	a0000	0	2	1	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	1/1	a0001	373	194	51	34	76	9	22	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0002	280	2	0	2	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0003	8	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0004	134	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0005	160	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0006	161	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0007	311	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0008	280	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0009	160	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0010	160	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0011	280	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	a0012	39	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR174_chrX_79139688_79180318	1/0	a0001	333	167	44	28	71	6	17	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/1	a0002	333	145	26	25	73	7	13	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	a0003	333	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	a0004	333	1	0	1	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	a0005	228	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR176_chr15_39794008_39925266	1/1	a0001	515	307	87	53	132	6	27	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	a0002	515	2	0	0	2	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	a0003	515	2	1	0	0	0	1	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	a0004	515	1	0	1	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR179_chr17_38319571_38348956	0/1	a0001	2367	238	40	41	114	13	29	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0002	2367	13	13	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0003	2367	10	10	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0004	2367	9	1	7	0	1	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0005	2367	6	6	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0006	2367	5	0	0	5	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0007	2367	4	0	4	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0008	2367	4	4	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0009	2367	3	1	2	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0010	2367	3	0	0	3	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0011	2367	3	0	0	3	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0012	2367	3	3	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0013	2367	2	1	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0014	2367	2	2	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0015	2367	2	0	0	2	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0016	2367	2	1	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0017	2367	2	0	0	0	2	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0018	2367	2	2	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956