JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR179_chr17_38319571_38348956	0/0	a0019	2367	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0020	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0021	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0022	1614	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0023	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0024	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0025	2367	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0026	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0027	2367	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0028	2367	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0029	2367	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0030	2367	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0031	2367	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0032	2367	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0033	2367	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0034	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0035	2367	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0036	2367	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0037	2358	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0038	2367	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0039	2367	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0040	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0041	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0042	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0043	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	a0044	2367	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR17_chr2_127641153_127657639	1/1	a0001	339	419	95	82	176	16	48	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	a0002	339	1	0	1	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	a0003	339	1	0	1	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	a0004	339	1	1	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR180_chr13_94596857_94639661	1/1	a0001	440	338	90	62	129	16	39	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	a0002	440	2	0	0	2	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	a0003	440	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	a0004	440	1	0	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	a0005	440	1	0	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	a0006	440	1	0	0	0	0	1	copy fasta	GPR180	chr13	94596857	94639661
GPR182_chr12_56989492_57003447	1/1	a0001	404	252	72	54	101	7	16	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	a0002	404	70	15	13	29	5	8	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	a0003	108	1	1	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	a0004	404	1	0	1	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR183_chr13_99289539_99312399	1/1	a0001	361	449	91	80	216	16	44	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	a0002	361	2	2	0	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	a0003	361	1	0	0	1	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	a0004	361	1	1	0	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	a0005	361	1	0	0	1	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR18_chr13_99249739_99263379	1/1	a0001	331	425	93	74	197	13	46	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	a0002	331	1	0	0	0	1	0	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	a0003	331	1	0	0	1	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	a0004	331	1	1	0	0	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR19_chr12_12655890_12701183	0/1	a0001	415	379	71	71	181	14	41	copy fasta	GPR19	chr12	12655890	12701183