JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR19_chr12_12655890_12701183	1/0	a0002	415	27	16	7	2	0	1	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	a0003	415	4	4	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	a0004	415	1	1	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	a0005	415	1	0	0	1	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR20_chr8_141351470_141372286	0/1	a0001	358	232	50	52	89	8	32	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	a0002	358	116	10	12	80	1	13	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	a0003	358	30	24	3	0	1	2	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	a0004	358	15	9	4	0	1	1	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	a0005	358	4	0	0	4	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	a0006	358	1	0	0	0	1	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	a0007	358	1	0	0	1	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	a0008	358	1	0	1	0	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	a0009	358	1	1	0	0	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR21_chr9_123028667_123040665	1/1	a0001	349	349	81	65	154	14	33	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	a0002	349	4	3	1	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	a0003	349	1	0	0	0	0	1	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	a0004	349	1	0	0	1	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	a0005	349	1	1	0	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	a0006	349	1	0	0	1	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	a0007	349	1	1	0	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR22_chr7_107465057_107480684	1/1	a0001	433	409	98	68	183	18	40	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	a0002	433	2	2	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	a0003	433	1	0	0	1	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR25_chr1_200867981_200879178	1/1	a0001	361	426	94	74	198	16	42	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	a0002	361	4	1	2	0	0	1	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	a0003	361	1	0	0	1	0	0	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	a0004	361	1	1	0	0	0	0	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	a0005	361	1	0	0	1	0	0	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	a0006	361	1	0	0	0	0	1	copy fasta	GPR25	chr1	200867981	200879178
GPR26_chr10_123661355_123702399	1/1	a0001	337	411	98	80	168	16	47	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	a0002	337	1	0	0	0	0	1	copy fasta	GPR26	chr10	123661355	123702399
GPR27_chr3_71748855_71761496	1/1	a0001	375	416	91	75	184	16	48	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	a0002	375	1	0	1	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	a0003	375	1	1	0	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR31_chr6_167150247_167162980	0/1	a0001	319	417	85	78	200	16	37	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0002	59	6	2	1	3	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	1/0	a0003	319	6	5	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0004	319	3	0	0	0	0	3	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0005	319	2	0	0	0	0	2	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0006	319	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0007	319	1	1	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0008	319	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0009	319	1	0	1	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0010	319	1	1	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0011	319	1	1	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0012	319	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	a0013	319	1	1	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR32_chr19_50765464_50776732	1/1	a0001	356	394	93	79	163	13	44	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	a0002	356	16	0	3	10	1	2	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	a0003	356	4	4	0	0	0	0	copy fasta	GPR32	chr19	50765464	50776732