JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR32_chr19_50765464_50776732	0/0	a0004	356	3	3	0	0	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	a0005	356	2	0	0	2	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	a0006	356	1	0	0	1	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR33_chr14_31477875_31493039	0/1	a0001	139	417	79	70	206	16	45	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	1/0	a0002	333	22	2	0	16	0	3	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	a0003	139	7	7	0	0	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	a0004	139	2	2	0	0	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR34_chrX_41683973_41702275	1/1	a0001	381	294	70	50	131	11	30	copy fasta	GPR34	chrX	41683973	41702275
GPR34_chrX_41683973_41702275	0/0	a0002	381	2	2	0	0	0	0	copy fasta	GPR34	chrX	41683973	41702275
GPR34_chrX_41683973_41702275	0/0	a0003	381	1	0	0	1	0	0	copy fasta	GPR34	chrX	41683973	41702275
GPR35_chr2_240620480_240638159	0/0	a0001	309	176	5	24	116	5	26	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	1/0	a0002	309	137	58	37	34	4	3	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0003	309	52	18	10	13	3	8	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/1	a0004	309	13	0	1	3	0	8	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0005	309	9	9	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0006	309	3	2	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0007	309	2	1	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0008	309	2	2	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0009	309	1	0	0	0	1	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0010	309	1	0	0	0	0	1	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0011	309	1	0	0	0	0	1	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0012	309	1	0	0	0	0	1	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0013	309	1	0	0	0	1	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	a0014	309	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR37L1_chr1_202117917_202138592	0/1	a0001	481	221	55	48	72	14	31	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	a0002	481	130	27	21	73	2	7	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	1/0	a0003	481	81	18	12	46	2	2	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	a0004	481	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	a0005	481	1	0	1	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37_chr7_124738885_124770792	1/1	a0001	613	398	80	68	186	18	44	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	a0002	613	3	3	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	a0003	613	2	0	0	2	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	a0004	613	2	0	0	2	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	a0005	613	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	a0006	613	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	a0007	613	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	a0008	613	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	a0009	613	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR39_chr2_132411805_132651582	0/0	a0001	453	113	30	21	41	6	15	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	a0002	453	70	27	10	18	4	11	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	a0003	454	11	9	0	2	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	a0004	453	8	7	1	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	a0005	453	2	2	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	a0006	453	1	0	0	1	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	a0007	453	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	a0008	453	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	a0009	454	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR3_chr1_27387622_27400814	1/1	a0001	330	354	88	60	144	14	46	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	a0002	330	2	2	0	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR42_chr19_35366068_35377962	0/0	a0001	346	201	52	38	83	8	20	copy fasta	GPR42	chr19	35366068	35377962