JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR42_chr19_35366068_35377962	0/0	a0002	346	56	14	0	40	0	2	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0003	346	39	4	15	5	5	10	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	1/0	a0004	346	37	2	11	20	2	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0005	346	12	6	3	0	2	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0006	346	7	0	2	1	1	3	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0007	346	5	2	2	0	0	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0008	346	5	4	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0009	346	5	5	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0010	346	4	3	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0011	346	4	0	0	4	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0012	346	4	0	0	4	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0013	346	3	0	0	3	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0014	346	2	2	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0015	346	2	0	2	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0016	346	2	0	1	0	0	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0017	346	2	0	0	2	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0018	346	2	0	0	2	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0019	346	1	0	0	0	0	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0020	346	1	0	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0021	346	1	0	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0022	346	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0023	346	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0024	346	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	a0025	346	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR45_chr2_105236743_105248467	1/1	a0001	372	386	92	62	180	12	38	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	a0002	372	22	4	9	6	2	1	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	a0003	372	2	0	2	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	a0004	372	1	0	1	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	a0005	372	1	0	0	0	0	1	copy fasta	GPR45	chr2	105236743	105248467
GPR4_chr19_45584764_45607212	1/1	a0001	362	448	96	84	202	16	48	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	a0002	362	1	0	0	1	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	a0003	362	1	0	0	1	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR50_chrX_151171584_151186465	1/0	a0001	617	179	32	11	118	0	17	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0002	613	75	10	29	24	6	6	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/1	a0003	617	38	9	13	2	4	9	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0004	613	30	14	2	12	2	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0005	613	18	10	6	1	1	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0006	617	4	3	1	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0007	606	3	0	0	3	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0008	613	2	0	0	0	0	2	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0009	16	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0010	615	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0011	617	1	1	0	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0012	613	1	1	0	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0013	617	1	1	0	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0014	587	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	a0015	372	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR52_chr1_174442964_174454545	1/1	a0001	361	412	91	67	194	16	42	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	a0002	361	3	0	0	3	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	a0003	361	1	0	0	0	0	1	copy fasta	GPR52	chr1	174442964	174454545