JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR52_chr1_174442964_174454545	0/0	a0004	361	1	0	0	1	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	a0005	361	1	1	0	0	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	a0006	361	1	0	1	0	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	a0007	361	1	0	0	0	0	1	copy fasta	GPR52	chr1	174442964	174454545
GPR55_chr2_230902328_230930242	1/1	a0001	319	289	46	62	132	14	33	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	a0002	319	93	39	5	39	2	8	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	a0003	319	11	11	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	a0004	319	2	2	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	a0005	319	1	0	0	0	0	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	a0006	319	1	0	1	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	a0007	319	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR61_chr1_109534872_109552260	1/1	a0001	451	381	90	62	170	12	45	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	a0002	451	4	0	4	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	a0003	451	1	0	0	0	0	1	copy fasta	GPR61	chr1	109534872	109552260
GPR62_chr3_51950381_51962499	0/1	a0001	368	292	50	55	132	10	44	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	a0002	368	44	25	2	15	0	2	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	a0003	368	10	9	1	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	1/0	a0004	368	1	0	0	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	a0005	368	1	0	0	1	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR63_chr6_96789125_96842477	1/1	a0001	419	380	92	66	171	13	36	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	a0002	419	5	0	4	0	1	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	a0003	419	3	0	0	3	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	a0004	419	2	2	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	a0005	419	1	0	0	1	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	a0006	419	1	0	0	1	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR65_chr14_88000135_88019811	1/1	a0001	337	303	68	55	135	15	28	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	a0002	337	93	21	15	45	1	11	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	a0003	337	3	0	0	0	0	3	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	a0004	337	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	a0005	337	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	a0006	337	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR68_chr14_91227532_91249704	0/0	a0000	0	1	0	0	0	0	1	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	1/1	a0001	365	416	88	75	194	12	45	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	a0002	365	2	2	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	a0003	365	1	0	1	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR6_chr6_109973311_109985720	1/1	a0001	362	451	96	84	205	18	46	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	a0002	362	1	0	0	1	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR75_chr2_53847912_53864967	1/1	a0001	540	413	93	68	199	15	36	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0002	540	6	0	4	0	1	1	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0003	540	3	0	0	3	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0004	540	3	3	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0005	540	2	0	0	2	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0006	540	1	1	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0007	540	1	0	0	1	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0008	540	1	1	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0009	540	1	0	0	1	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	a0010	540	1	0	0	0	0	1	copy fasta	GPR75	chr2	53847912	53864967
GPR78_chr4_8575392_8595023	1/1	a0001	363	350	70	63	179	13	23	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0002	363	42	18	2	14	4	4	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0003	363	31	1	17	1	1	11	copy fasta	GPR78	chr4	8575392	8595023