JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPR78_chr4_8575392_8595023	0/0	a0004	323	19	0	0	17	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0005	363	4	0	1	0	0	3	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0006	363	4	3	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0007	363	2	0	0	0	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0008	363	2	1	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0009	363	2	0	0	2	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0010	363	1	1	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0011	363	1	1	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0012	363	1	0	0	1	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0013	363	1	0	0	0	0	1	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0014	363	1	1	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	a0015	363	1	0	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR82_chrX_41719181_41735130	1/1	a0001	336	288	71	46	131	13	25	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	a0002	336	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	a0003	336	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	a0004	336	1	0	0	0	0	1	copy fasta	GPR82	chrX	41719181	41735130
GPR83_chr11_94372316_94406419	1/0	a0001	423	381	91	69	169	14	37	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/1	a0002	423	40	2	3	25	0	9	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	a0003	423	2	1	0	0	0	1	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	a0004	423	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	a0005	423	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	a0006	423	1	0	0	0	0	1	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	a0007	423	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	a0008	423	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR84_chr12_54357445_54369486	1/1	a0001	396	398	95	79	171	14	37	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	a0002	396	10	0	0	10	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	a0003	396	5	0	0	5	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	a0004	396	2	0	0	2	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	a0005	396	1	0	0	1	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	a0006	396	1	0	0	1	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	a0007	396	1	0	1	0	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	a0008	396	1	1	0	0	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	a0009	396	1	0	0	0	0	1	copy fasta	GPR84	chr12	54357445	54369486
GPR85_chr7_113077285_113091827	1/1	a0001	370	384	94	80	140	18	50	copy fasta	GPR85	chr7	113077285	113091827
GPR87_chr3_151289086_151321820	1/1	a0001	358	440	96	75	205	17	45	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	a0002	358	2	2	0	0	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	a0003	358	1	0	0	0	1	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	a0004	358	1	0	0	0	0	1	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	a0005	358	1	0	0	1	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	a0006	358	1	0	1	0	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR88_chr1_100533139_100547021	0/1	a0001	384	242	15	41	141	10	34	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	1/0	a0002	384	183	77	31	56	4	14	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	a0003	384	1	0	0	1	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR89A_chr1_145602988_145675650	1/1	a0001	455	273	74	46	111	10	30	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	a0002	455	1	0	0	1	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89B_chr1_147923420_147998592	1/1	a0001	455	268	68	48	113	10	27	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	a0002	455	3	3	0	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	a0003	127	1	0	0	0	0	1	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	a0004	455	1	0	0	1	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	a0005	455	1	1	0	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592