Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKR1A1_chr1_45545826_45575049	0/0	a0005	325	1	0	0	1	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	a0006	325	1	1	0	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	a0007	325	1	0	0	0	0	1	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1B10_chr7_134522567_134546412	0/1	a0001	316	349	90	63	140	12	43	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0002	316	43	0	0	43	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0003	316	27	0	13	14	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0004	271	14	2	2	7	0	3	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	1/0	a0005	316	6	0	3	0	0	2	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0006	271	3	0	0	3	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0007	316	2	2	0	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0008	316	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0009	316	1	0	1	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0010	316	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	a0011	316	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B15_chr7_134544110_134584869	1/1	a0001	344	390	95	75	170	10	38	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	a0002	344	4	0	0	4	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	a0003	344	4	0	0	4	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	a0004	344	1	1	0	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	a0005	344	1	1	0	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	a0006	193	1	0	0	0	0	1	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	a0007	344	1	0	0	0	0	1	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	a0008	344	1	0	1	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	a0009	344	1	1	0	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B1_chr7_134437356_134464100	1/1	a0001	316	443	96	76	204	16	49	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	a0002	316	2	0	1	0	0	1	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	a0003	316	1	0	1	0	0	0	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1C1_chr10_4958415_4988283	1/1	a0001	323	419	93	71	192	15	46	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	a0002	323	2	0	1	0	1	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	a0003	322	2	0	0	2	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	a0004	95	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	a0005	323	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	a0006	323	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C2_chr10_4982775_5008857	1/1	a0001	323	387	76	68	180	16	45	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	a0002	323	16	13	3	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	a0003	323	3	0	2	0	0	1	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	a0004	323	2	1	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	a0005	323	2	2	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	a0006	323	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	a0007	323	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C3_chr10_5089414_5112686	0/0	a0001	323	266	34	35	159	8	30	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	1/1	a0002	323	113	45	26	26	4	10	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	a0003	323	27	0	11	16	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	a0004	323	14	5	5	0	4	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	a0005	323	9	8	1	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	a0006	323	4	0	0	4	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	a0007	323	3	3	0	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	a0008	323	1	1	0	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	a0009	323	1	0	0	1	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C4_chr10_5191837_5223949	0/1	a0001	323	369	78	60	180	16	34	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	a0002	323	49	0	18	24	2	5	copy fasta	AKR1C4	chr10	5191837	5223949