JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPRASP1_chrX_102646483_102664083	1/1	a0001	1395	261	55	43	129	11	21	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0002	1395	47	17	2	20	0	8	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0003	1395	5	0	3	0	2	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0004	1395	3	3	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0005	1395	2	2	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0006	1395	1	0	0	0	0	1	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0007	1395	1	0	0	1	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0008	1395	1	0	1	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0009	1395	1	0	0	1	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	a0010	1395	1	1	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP2_chrX_102707448_102722733	1/1	a0001	838	270	55	46	129	11	27	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0002	838	10	2	1	7	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0003	838	4	4	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0004	834	3	3	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0005	79	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0006	838	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0007	831	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0008	407	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0009	172	1	1	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	a0010	131	1	1	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP3_chrX_102715743_102758540	1/1	a0001	547	270	67	39	127	8	27	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	a0002	547	3	0	2	0	1	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	a0003	380	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	a0004	547	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	a0005	547	1	1	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	a0006	547	1	0	0	0	0	1	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	a0007	50	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRC5A_chr12_12886562_12922937	1/1	a0001	357	359	72	73	162	8	42	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	a0002	357	22	19	0	0	0	3	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	a0003	357	7	5	2	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	a0004	357	3	0	0	3	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	a0005	357	2	0	0	2	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	a0006	357	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	a0007	357	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	a0008	357	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5B_chr16_19851691_19889848	1/1	a0001	403	397	85	71	182	14	43	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	a0002	403	4	4	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	a0003	403	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	a0004	403	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	a0005	395	1	0	1	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	a0006	403	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	a0007	403	1	0	0	0	0	1	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	a0008	403	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	a0009	403	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5C_chr17_74427088_74452429	1/1	a0001	441	324	91	41	144	12	34	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	a0002	441	6	5	1	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	a0003	441	2	0	2	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	a0004	441	2	0	0	2	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	a0005	441	1	0	0	1	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	a0006	441	1	1	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429