JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPRC5C_chr17_74427088_74452429	0/0	a0007	441	1	1	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	a0008	441	1	0	0	1	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5D_chr12_12935575_12957170	1/1	a0001	345	373	89	73	149	17	43	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	a0002	345	27	0	6	19	1	1	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	a0003	345	2	1	1	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	a0004	345	1	0	0	1	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	a0005	345	1	0	1	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	a0006	345	1	0	1	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	a0007	345	1	0	0	1	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC6A_chr6_116787085_116834083	0/0	a0001	926	134	27	29	65	1	12	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	1/0	a0002	926	122	10	16	77	4	14	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0003	928	33	30	3	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/1	a0004	926	29	1	8	4	5	10	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0005	56	25	12	6	3	1	3	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0006	926	11	5	1	0	1	4	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0007	926	2	0	0	0	0	2	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0008	926	2	2	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0009	926	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0010	926	1	1	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0011	926	1	0	0	0	0	1	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0012	926	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0013	926	1	1	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0014	926	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0015	928	1	0	1	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0016	926	1	0	1	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0017	928	1	1	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	a0018	926	1	0	1	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRIN1_chr5_176590802_176615156	0/0	a0001	1008	266	62	54	107	10	33	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0002	1000	116	21	23	56	6	10	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0003	1008	3	3	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0004	1008	3	2	1	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0005	1008	2	0	0	0	2	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0006	1008	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	1/0	a0007	1008	1	0	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0008	1008	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0009	1008	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0010	1008	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0011	1000	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	a0012	1000	1	0	0	0	0	1	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN2_chr10_46536736_46561658	0/0	a0001	461	64	5	4	51	1	3	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/1	a0002	458	50	1	3	42	1	2	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0003	458	6	2	0	2	0	2	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0004	458	6	2	1	0	2	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0005	458	4	0	0	4	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0006	458	2	0	0	2	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0007	461	1	0	0	0	1	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0008	461	1	0	0	0	1	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0009	461	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0010	461	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	a0011	461	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658