JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPRIN2_chr10_46536736_46561658	1/0	a0012	458	1	0	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN3_chr4_89231383_89312800	0/0	a0001	776	151	41	18	68	7	17	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	1/1	a0002	776	137	19	39	60	5	12	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0003	776	24	0	3	13	3	5	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0004	776	9	7	2	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0005	776	4	4	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0006	776	3	3	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0007	776	3	3	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0008	776	3	3	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0009	776	2	2	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0010	776	2	0	0	0	0	2	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0011	776	2	2	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0012	776	2	0	0	0	0	2	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0013	776	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0014	776	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0015	776	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0016	776	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0017	776	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0018	776	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0019	776	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0020	776	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0021	776	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0022	776	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0023	776	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0024	776	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0025	776	1	0	0	0	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	a0026	776	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPS1_chr17_82046898_82062470	1/1	a0001	487	437	96	84	191	18	46	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	a0002	487	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	a0003	487	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	a0004	487	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS2_chr17_7307661_7320360	1/1	a0001	327	407	94	82	173	14	42	copy fasta	GPS2	chr17	7307661	7320360
GPS2_chr17_7307661_7320360	0/0	a0002	327	7	0	0	7	0	0	copy fasta	GPS2	chr17	7307661	7320360
GPSM1_chr9_136322539_136364601	0/0	a0000	0	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	1/1	a0001	675	321	71	59	135	15	39	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0002	675	64	22	21	15	1	5	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0003	675	4	0	0	4	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0004	675	1	0	0	0	0	1	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0005	675	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0006	675	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0007	675	1	0	1	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0008	675	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0009	675	1	0	0	0	0	1	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0010	675	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0011	675	1	0	0	0	1	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0012	675	1	0	1	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	a0013	675	1	0	0	0	1	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM2_chr1_108871985_108939545	1/1	a0001	684	154	25	31	73	6	17	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	a0002	683	57	31	10	9	4	3	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	a0003	683	19	14	1	0	2	2	copy fasta	GPSM2	chr1	108871985	108939545