JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPSM2_chr1_108871985_108939545	0/0	a0004	683	18	6	0	4	0	8	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	a0005	684	4	4	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	a0006	683	3	2	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	a0007	684	2	1	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	a0008	683	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	a0009	683	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	a0010	684	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM3_chr6_32185766_32197643	0/1	a0001	160	438	92	80	204	16	45	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	a0002	160	2	2	0	0	0	0	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	a0003	160	1	0	0	0	0	1	copy fasta	GPSM3	chr6	32185766	32197643
GPT2_chr16_46879362_46936289	1/1	a0001	523	190	72	42	36	12	26	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	a0002	523	4	4	0	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT_chr8_144499140_144512172	1/0	a0001	496	213	76	28	85	7	16	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/1	a0002	496	162	17	41	73	8	22	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	a0003	496	4	0	3	0	1	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	a0004	496	2	2	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	a0005	496	1	1	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	a0006	496	1	0	1	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	a0007	496	1	0	0	0	0	1	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	a0008	496	1	0	1	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	a0009	496	1	0	0	0	0	1	copy fasta	GPT	chr8	144499140	144512172
GPX1_chr3_49352176_49363353	0/1	a0001	46	193	41	31	90	5	25	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	a0002	47	78	20	18	23	8	9	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	1/0	a0003	48	48	25	13	1	5	3	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	a0004	46	6	5	0	0	0	1	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	a0005	46	1	1	0	0	0	0	copy fasta	GPX1	chr3	49352176	49363353
GPX2_chr14_64934158_64947745	1/1	a0001	39	413	92	66	189	16	48	copy fasta	GPX2	chr14	64934158	64947745
GPX2_chr14_64934158_64947745	0/0	a0002	39	1	0	0	1	0	0	copy fasta	GPX2	chr14	64934158	64947745
GPX3_chr5_151015591_151033988	1/1	a0001	72	472	98	82	226	16	48	copy fasta	GPX3	chr5	151015591	151033988
GPX4_chr19_1098994_1111779	1/1	a0001	72	416	84	85	177	18	50	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	a0002	72	11	10	1	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	a0003	72	1	0	0	1	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX5_chr6_28520881_28539955	0/1	a0001	221	405	87	72	183	14	48	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	a0002	221	5	5	0	0	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	a0003	221	1	0	0	1	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX6_chr6_28498296_28520793	0/0	a0001	72	240	62	31	127	3	17	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	1/1	a0002	72	181	23	36	85	9	26	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	a0003	72	8	6	2	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	a0004	72	2	0	2	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	a0005	72	1	1	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	a0006	72	1	0	0	0	0	1	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	a0007	72	1	0	1	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX7_chr1_52597371_52614051	1/1	a0001	187	368	98	56	155	16	41	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	a0002	56	2	0	0	2	0	0	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	a0003	187	2	0	0	1	0	1	copy fasta	GPX7	chr1	52597371	52614051
GPX8_chr5_55155171_55172297	0/0	a0001	209	332	82	57	153	10	30	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	1/1	a0002	209	82	8	11	39	6	16	copy fasta	GPX8	chr5	55155171	55172297
GRAMD1A_chr19_34995323_35031469	1/0	a0001	724	355	81	67	150	14	42	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/1	a0002	724	2	0	1	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	a0003	724	1	1	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469