JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRAMD1A_chr19_34995323_35031469	0/0	a0004	724	1	0	0	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	a0005	724	1	0	0	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	a0006	724	1	1	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	a0007	724	1	1	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1B_chr11_123425269_123632767	1/1	a0001	877	275	80	59	86	10	38	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	a0002	877	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	a0003	877	1	0	1	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	a0004	877	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	a0005	877	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	a0006	877	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	a0007	877	1	0	0	0	1	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	a0008	877	1	0	0	0	1	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1C_chr3_113833788_113952174	1/1	a0001	662	310	81	56	125	14	32	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0002	662	3	3	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0003	662	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0004	662	1	0	1	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0005	662	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0006	662	1	0	0	1	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0007	662	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0008	662	1	0	0	1	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0009	662	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0010	662	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0011	662	1	0	1	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0012	662	1	0	0	1	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	a0013	662	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD2A_chr15_72154806_72202787	1/1	a0001	354	339	96	59	150	8	24	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	a0002	354	15	0	5	10	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	a0003	354	12	0	2	10	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2B_chr5_126418409_126499364	1/1	a0001	432	331	90	71	116	18	34	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	a0002	432	2	2	0	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	a0003	432	1	0	1	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD4_chr22_46615386_46684785	1/1	a0001	578	326	82	70	120	14	38	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	a0002	578	2	2	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAP2_chr22_39896084_39978721	1/1	a0001	330	302	71	76	99	16	38	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	a0002	330	5	5	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	a0003	330	4	3	1	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	a0004	330	2	0	1	0	0	1	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	a0005	330	1	0	0	1	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	a0006	330	1	0	0	0	0	1	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	a0007	330	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAPL_chr17_19122589_19164187	1/1	a0001	118	74	26	16	8	8	14	copy fasta	GRAPL	chr17	19122589	19164187
GRAP_chr17_19015656_19051957	1/1	a0001	217	259	56	52	105	14	30	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/0	a0002	217	1	0	0	1	0	0	copy fasta	GRAP	chr17	19015656	19051957
GRB10_chr7_50585068_50787896	1/1	a0001	594	270	76	50	104	12	26	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	a0002	594	3	3	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	a0003	594	2	0	2	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	a0004	594	2	2	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	a0005	594	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB14_chr2_164487417_164626482	1/1	a0001	540	154	72	21	48	4	7	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	a0002	540	132	8	38	57	7	22	copy fasta	GRB14	chr2	164487417	164626482