JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRB14_chr2_164487417_164626482	0/0	a0003	540	2	0	1	0	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	a0004	540	1	0	0	0	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	a0005	540	1	0	0	0	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	a0006	540	1	1	0	0	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	a0007	540	1	1	0	0	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	a0008	540	1	0	0	1	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	a0009	540	1	0	0	0	1	0	copy fasta	GRB14	chr2	164487417	164626482
GRB2_chr17_75313076_75410678	1/1	a0001	217	246	88	54	56	12	34	copy fasta	GRB2	chr17	75313076	75410678
GRB7_chr17_39732938_39752285	1/1	a0001	532	372	83	76	157	16	38	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0002	532	5	5	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0003	532	2	1	1	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0004	532	1	0	1	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0005	532	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0006	532	1	0	0	1	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0007	532	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0008	532	1	0	0	1	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0009	532	1	0	0	1	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	a0010	532	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GREB1L_chr18_21237232_21531112	0/1	a0001	1924	138	69	20	35	5	8	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	1/0	a0002	1923	3	2	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	a0003	1920	3	1	2	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	a0004	1924	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	a0005	1924	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	a0006	1924	1	0	0	1	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	a0007	1924	1	0	0	0	1	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1_chr2_11529045_11647788	0/0	a0001	1949	53	1	11	34	0	7	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0002	1949	41	14	2	21	0	4	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	1/0	a0003	1949	31	4	9	14	2	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0004	1949	31	1	8	15	2	5	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0005	1949	29	5	5	14	4	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0006	1949	16	4	1	9	0	2	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0007	1949	12	9	0	3	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0008	1949	12	8	2	0	1	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0009	1949	9	6	0	1	0	2	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0010	1949	6	5	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0011	1949	5	3	1	0	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0012	1949	5	0	5	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0013	1949	4	4	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0014	1949	3	3	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0015	1949	3	1	1	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0016	1949	3	2	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0017	1949	3	0	3	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0018	1949	2	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0019	1949	2	2	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0020	1949	2	0	0	1	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0021	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0022	1949	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0023	1949	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0024	1949	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0025	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788