JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GREB1_chr2_11529045_11647788	0/0	a0026	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0027	1949	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0028	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0029	1949	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0030	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0031	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0032	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0033	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0034	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0035	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0036	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0037	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0038	1949	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0039	1949	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0040	1851	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0041	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0042	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0043	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0044	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0045	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0046	1949	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0047	1949	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0048	1949	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0049	1949	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0050	1949	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0051	1949	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0052	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0053	1949	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/1	a0054	1949	1	0	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0055	1949	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	a0056	1949	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREM1_chr15_32713004_32750106	0/1	a0001	184	420	100	80	179	14	46	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	a0002	184	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM2_chr1_240484573_240617155	0/0	a0001	168	376	90	54	180	14	38	copy fasta	GREM2	chr1	240484573	240617155
GRHL1_chr2_9946693_10007277	1/1	a0001	618	277	47	53	132	9	34	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	a0002	618	86	5	20	52	5	4	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	a0003	618	26	23	3	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	a0004	618	25	20	4	1	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	a0005	618	3	3	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	a0006	618	1	0	0	1	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL2_chr8_101487439_101674726	1/1	a0001	625	283	86	40	120	10	25	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	a0002	625	11	0	0	10	0	1	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	a0003	625	9	0	0	9	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	a0004	625	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	a0005	625	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	a0006	625	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL3_chr1_24314357_24360318	1/1	a0001	602	296	70	51	121	10	42	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0002	602	59	21	8	25	2	3	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0003	602	3	0	3	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0004	602	3	3	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318