JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRHL3_chr1_24314357_24360318	0/0	a0005	602	2	0	1	0	1	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0006	602	2	1	1	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0007	602	1	0	0	1	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0008	602	1	0	0	0	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0009	602	1	1	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0010	602	1	0	0	1	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0011	602	1	0	0	0	1	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0012	602	1	0	0	0	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	a0013	602	1	0	0	0	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHPR_chr9_37417696_37441990	1/1	a0001	328	389	84	72	174	14	43	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	a0002	328	6	6	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	a0003	328	2	2	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	a0004	328	1	0	0	0	0	1	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	a0005	328	1	0	0	1	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	a0006	328	1	0	0	1	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	a0007	328	1	1	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	a0008	328	1	1	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRIA1_chr5_153485670_153818869	1/1	a0001	906	194	76	46	26	10	34	copy fasta	GRIA1	chr5	153485670	153818869
GRIA2_chr4_157215728_157371075	0/0	a0001	883	216	68	36	82	10	20	copy fasta	GRIA2	chr4	157215728	157371075
GRIA3_chrX_123179278_123495915	1/1	a0001	894	203	63	37	72	5	24	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	a0002	35	1	0	0	1	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	a0003	894	1	0	0	1	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	a0004	894	1	0	1	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	a0005	894	1	1	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA4_chr11_105605073_105987090	1/1	a0001	902	181	73	26	62	6	12	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	a0002	902	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	a0003	902	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	a0004	902	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRID1_chr10_85594552_86371795	0/0	a0001	1009	88	38	20	10	4	16	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	a0002	1009	6	6	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	a0003	1009	2	0	0	2	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID2IP_chr7_6491778_6556461	1/0	a0001	1211	201	46	34	90	7	23	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/1	a0002	1211	89	21	18	38	4	7	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0003	1211	19	0	2	12	2	3	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0004	1211	14	1	5	1	3	4	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0005	1211	8	1	6	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0006	1211	6	6	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0007	1211	3	3	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0008	1211	2	0	0	0	1	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0009	1211	2	2	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0010	1211	2	1	0	0	1	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0011	1211	2	2	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0012	1211	1	0	1	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0013	1211	1	0	0	0	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0014	1211	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0015	1211	1	0	1	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0016	1211	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0017	1211	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0018	1211	1	0	0	0	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0019	1211	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461