JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRID2IP_chr7_6491778_6556461	0/0	a0020	1211	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0021	1211	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0022	1211	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0023	1211	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0024	1211	1	0	0	0	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0025	1211	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0026	1211	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0027	1211	1	0	0	0	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0028	1211	1	0	1	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	a0029	1211	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2_chr4_92298966_93779566	0/0	a0001	1007	31	19	6	4	0	2	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	a0002	1007	2	2	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	a0003	1007	1	1	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRIFIN_chr7_2469728_2481398	1/1	a0001	144	346	79	65	142	16	42	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	a0002	144	22	10	5	5	0	2	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	a0003	144	5	0	0	5	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	a0004	144	3	3	0	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	a0005	144	1	0	1	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	a0006	144	1	0	1	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	a0007	144	1	1	0	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	a0008	144	1	1	0	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIK1_chr21_29531933_29944996	0/0	a0001	949	160	76	28	46	4	6	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	a0002	949	1	0	0	1	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	a0003	949	1	0	0	1	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK2_chr6_101388708_102075083	0/0	a0001	908	113	48	12	38	0	15	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	a0002	908	1	0	1	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	a0003	908	1	0	0	0	0	1	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	a0004	908	1	0	1	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK3_chr1_36790527_37039515	0/1	a0001	919	58	46	8	0	0	3	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	1/0	a0002	919	56	28	10	6	4	7	copy fasta	GRIK3	chr1	36790527	37039515
GRIK4_chr11_120506748_120993906	1/1	a0001	956	115	51	14	28	4	16	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	a0002	956	5	5	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	a0003	956	2	2	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	a0004	956	2	2	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	a0005	956	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	a0006	956	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	a0007	956	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	a0008	956	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK5_chr19_41993324_42075206	1/1	a0001	980	170	45	25	60	4	34	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	a0002	980	1	1	0	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	a0003	980	1	0	1	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIN1_chr9_137134154_137173756	1/1	a0001	938	298	94	62	82	16	42	copy fasta	GRIN1	chr9	137134154	137173756
GRIN2A_chr16_9748408_10187428	1/1	a0001	1464	168	76	40	32	6	12	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2B_chr12_13532337_13986602	1/1	a0001	1484	191	75	40	34	12	28	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	a0002	1484	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	a0003	1484	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2C_chr17_74837023_74864885	0/0	a0000	0	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/1	a0001	1236	130	27	34	44	7	17	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0002	1236	96	24	9	45	8	10	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	1/0	a0003	1233	78	14	11	41	1	10	copy fasta	GRIN2C	chr17	74837023	74864885