JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRIN2C_chr17_74837023_74864885	0/0	a0004	513	17	2	5	6	0	4	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0005	1236	7	6	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0006	513	5	0	1	4	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0007	1236	4	4	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0008	1236	3	3	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0009	1234	3	3	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0010	1233	2	2	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0011	1236	2	0	1	0	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0012	1236	2	2	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0013	1233	1	0	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0014	1236	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0015	1236	1	0	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0016	1233	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0017	1236	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0018	1236	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0019	1236	1	0	0	0	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0020	1152	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0021	1236	1	0	0	0	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	a0022	1236	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2D_chr19_48388668_48449931	1/1	a0001	1336	362	91	74	146	10	39	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	a0002	1336	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	a0003	1336	1	0	0	0	0	1	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	a0004	1330	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	a0005	1336	1	1	0	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN3A_chr9_101564352_101743647	1/0	a0001	1115	118	26	19	54	4	14	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0002	1115	58	40	4	8	2	4	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0003	1115	33	5	13	9	4	2	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0004	1115	29	4	5	13	1	6	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0005	1115	21	7	4	10	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0006	1115	21	0	6	9	2	4	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/1	a0007	1115	17	0	1	10	0	5	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0008	1115	9	0	3	6	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0009	1115	4	2	1	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0010	1115	2	0	0	2	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0011	1115	2	2	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0012	1115	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0013	1115	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0014	1115	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0015	1115	1	0	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0016	1115	1	0	0	0	1	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0017	1115	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0018	1115	1	0	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0019	1115	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0020	1115	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	a0021	1115	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3B_chr19_995419_1014732	0/0	a0001	1043	61	0	16	38	1	6	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0002	1042	41	0	1	35	0	5	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0003	482	40	8	13	9	3	7	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0004	1043	37	0	4	29	2	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0005	1043	26	0	1	23	0	2	copy fasta	GRIN3B	chr19	995419	1014732