Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKR1C4_chr10_5191837_5223949	0/0	a0003	323	9	8	1	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	a0004	323	3	2	1	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	1/0	a0005	323	1	0	0	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	a0006	323	1	0	0	0	0	1	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	a0007	323	1	1	0	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	a0008	323	1	1	0	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C8_chr10_5148920_5190150	1/0	a0001	326	280	49	48	145	10	27	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/1	a0002	326	43	22	11	0	2	7	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0003	266	43	0	12	24	2	5	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0004	326	30	19	6	0	4	1	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0005	326	3	3	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0006	326	2	2	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0007	326	1	1	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0008	326	1	1	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0009	326	1	1	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0010	326	1	0	1	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0011	326	1	0	1	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0012	326	1	0	1	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	a0013	326	1	0	0	1	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1D1_chr7_138071459_138123305	1/1	a0001	326	420	96	69	193	16	44	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	a0002	326	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	a0003	326	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	a0004	326	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	a0005	326	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	a0006	326	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	a0007	326	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1E2_chr10_4821207_4853062	1/1	a0001	320	296	78	58	114	10	34	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	a0002	320	29	1	3	25	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	a0003	300	11	2	5	0	0	4	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	a0004	320	11	3	8	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	a0005	320	4	4	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	a0006	320	3	0	0	3	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	a0007	320	2	2	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	a0008	320	1	0	0	0	0	1	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	a0009	320	1	0	0	0	0	1	copy fasta	AKR1E2	chr10	4821207	4853062
AKR7A2_chr1_19298965_19317144	1/1	a0001	359	389	54	72	199	16	46	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0002	359	15	6	0	7	0	2	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0003	359	14	14	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0004	359	11	1	7	0	2	1	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0005	359	10	10	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0006	359	6	0	0	6	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0007	359	4	4	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0008	122	2	1	1	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0009	359	2	2	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0010	359	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0011	359	1	0	0	1	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0012	359	1	0	1	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0013	359	1	0	0	1	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0014	359	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	a0015	359	1	0	1	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144