JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRIN3B_chr19_995419_1014732	0/1	a0006	1043	20	2	12	1	0	4	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0007	1043	12	5	4	0	0	3	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0008	1043	11	0	10	0	1	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0009	1043	10	0	0	8	0	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0010	482	8	3	3	0	0	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0011	1034	8	8	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0012	1043	7	6	1	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0013	1042	7	5	2	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	1/0	a0014	1043	6	1	2	0	1	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0015	1043	6	4	2	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0016	1043	5	3	0	2	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0017	1043	5	1	1	1	2	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0018	1034	5	0	0	4	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0019	1043	5	0	0	0	3	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0020	1043	5	5	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0021	1043	4	4	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0022	1043	4	0	0	4	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0023	482	3	3	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0024	1043	3	0	0	3	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0025	1043	3	0	0	3	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0026	1043	3	3	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0027	1043	3	3	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0028	1042	2	0	0	2	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0029	1034	2	0	0	0	2	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0030	1042	2	2	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0031	1043	2	1	1	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0032	1043	2	2	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0033	1034	2	2	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0034	482	2	0	1	0	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0035	1043	2	0	0	2	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0036	1034	2	0	0	2	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0037	1043	2	2	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0038	1043	2	1	1	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0039	1043	2	0	0	1	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0040	1043	2	1	0	0	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0041	1043	2	0	0	2	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0042	1042	2	0	0	2	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0043	1043	2	0	0	1	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0044	1043	1	0	0	0	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0045	1043	1	0	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0046	1042	1	0	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0047	1043	1	0	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0048	1034	1	0	0	0	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0049	1043	1	0	1	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0050	1043	1	0	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0051	1043	1	0	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0052	1043	1	0	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0053	1043	1	0	0	0	1	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0054	1042	1	0	0	0	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0055	1033	1	0	0	0	0	1	copy fasta	GRIN3B	chr19	995419	1014732