JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRIN3B_chr19_995419_1014732	0/0	a0106	1043	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0107	1043	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0108	1043	1	0	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	a0109	1049	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRINA_chr8_143985056_143998415	1/1	a0001	371	349	94	68	134	10	41	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	a0002	371	1	0	0	0	0	1	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	a0003	371	1	0	0	1	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	a0004	371	1	0	0	1	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRIP1_chr12_66342431_66684076	0/1	a0001	1128	173	46	31	59	10	26	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	1/0	a0002	1128	45	30	6	8	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	a0003	1128	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	a0004	1128	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	a0005	1128	1	0	1	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	a0006	1128	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	a0007	1128	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	a0008	1128	1	0	0	1	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP2_chr3_14484107_14545342	1/1	a0001	1043	325	85	71	125	13	29	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0002	1043	28	3	1	22	0	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0003	1043	11	3	1	5	2	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0004	1043	6	0	0	6	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0005	1043	3	0	2	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0006	1043	2	0	0	0	0	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0007	1043	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0008	1043	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0009	1043	1	1	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0010	1043	1	1	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0011	1043	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0012	1043	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0013	1043	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0014	1043	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0015	1043	1	0	1	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0016	1043	1	0	0	0	1	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0017	1043	1	0	0	0	0	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0018	1043	1	1	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	a0019	1043	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIPAP1_chrX_48968723_49007264	0/1	a0001	841	270	61	53	115	12	28	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	1/0	a0002	841	18	15	2	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0003	58	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0004	841	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0005	841	1	0	1	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0006	776	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0007	841	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0008	407	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0009	294	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0010	841	1	0	0	0	1	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	a0011	73	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRK2_chr11_67261473_67291556	1/1	a0001	689	301	88	60	125	6	20	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	a0002	689	1	0	0	1	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK3_chr22_25559675_25734294	1/1	a0001	688	174	76	38	40	6	12	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	a0002	688	1	0	0	1	0	0	copy fasta	GRK3	chr22	25559675	25734294