JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRK3_chr22_25559675_25734294	0/0	a0003	688	1	0	0	1	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK4_chr4_2958571_3045760	0/1	a0001	578	95	21	26	36	3	8	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0002	578	37	13	7	12	1	4	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0003	578	34	5	8	13	4	4	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0004	578	32	27	3	0	1	1	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	1/0	a0005	578	32	0	4	21	3	3	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0006	578	10	7	1	0	0	2	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0007	578	6	0	3	0	2	1	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0008	578	4	3	0	0	0	1	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0009	578	3	0	3	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0010	578	3	0	0	3	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0011	578	2	0	1	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0012	172	2	0	1	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0013	578	2	2	0	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0014	578	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0015	578	1	1	0	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0016	578	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0017	578	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0018	578	1	1	0	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	a0019	578	1	0	1	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK5_chr10_119202571_119464745	1/0	a0001	590	143	52	29	28	10	23	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	a0002	590	30	26	1	1	0	2	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/1	a0003	590	23	0	4	13	2	3	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	a0004	590	3	3	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	a0005	590	2	2	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	a0006	590	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK6_chr5_177421676_177447891	1/1	a0001	576	376	90	82	150	12	40	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	a0002	576	2	2	0	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	a0003	576	1	0	0	0	0	1	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	a0004	576	1	0	0	1	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	a0005	576	1	0	0	0	0	1	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	a0006	576	1	0	0	1	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK7_chr3_141758408_141824352	1/1	a0001	553	301	79	53	128	9	30	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	a0002	553	24	6	8	1	5	4	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	a0003	553	23	0	3	18	0	2	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	a0004	553	7	7	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	a0005	553	1	0	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	a0006	553	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	a0007	553	1	0	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRM1_chr6_146024062_146442601	0/1	a0001	1194	97	53	11	20	6	6	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	1/0	a0002	1194	49	16	10	15	1	6	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	a0003	1194	6	5	1	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	a0004	1194	3	2	1	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	a0005	1194	2	0	1	0	1	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	a0006	1194	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM2_chr3_51702068_51723613	1/1	a0001	872	310	72	72	121	13	30	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	a0002	872	12	10	2	0	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	a0003	872	3	0	2	0	1	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	a0004	872	3	0	0	3	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	a0005	872	2	0	0	0	0	2	copy fasta	GRM2	chr3	51702068	51723613