JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRM2_chr3_51702068_51723613	0/0	a0006	872	1	0	0	0	0	1	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	a0007	872	1	0	0	0	0	1	copy fasta	GRM2	chr3	51702068	51723613
GRM3_chr7_86638909_86869879	1/1	a0001	879	214	88	32	74	6	12	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	a0002	879	2	0	2	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM4_chr6_34013643_34151087	1/1	a0001	912	280	83	60	97	8	30	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	a0002	912	1	0	0	1	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	a0003	912	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM5_chr11_88499642_89070982	1/1	a0001	1212	178	79	29	60	2	6	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	a0002	1212	4	3	1	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	a0003	1212	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	a0004	1212	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM6_chr5_178973327_179000320	0/1	a0001	877	208	45	37	97	9	19	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	1/0	a0002	877	172	41	33	69	6	22	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0003	877	28	0	3	24	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0004	877	11	0	1	9	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0005	877	5	1	3	0	1	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0006	877	4	0	4	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0007	877	4	4	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0008	877	4	0	3	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0009	877	4	0	0	4	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0010	877	4	0	0	4	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0011	877	3	2	1	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0012	877	2	0	0	2	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0013	877	2	2	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0014	877	2	0	0	2	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0015	877	2	0	1	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0016	872	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0017	877	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0018	877	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0019	877	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0020	877	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0021	877	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0022	877	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0023	877	1	0	0	0	1	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0024	877	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0025	877	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0026	408	1	0	0	0	1	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0027	877	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	a0028	872	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM7_chr3_6856115_7746533	0/0	a0001	915	73	50	11	2	2	8	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	a0002	915	7	0	7	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM8_chr7_126433598_127257941	0/0	a0001	908	92	47	19	6	3	17	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	a0002	908	9	1	2	4	1	1	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	a0003	908	4	4	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	a0004	908	1	0	1	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	a0005	908	1	1	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	a0006	908	1	1	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRN_chr17_44340302_44358106	1/1	a0001	593	439	89	79	207	15	47	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	a0002	593	4	4	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	a0003	593	3	0	0	1	1	1	copy fasta	GRN	chr17	44340302	44358106