JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRN_chr17_44340302_44358106	0/0	a0004	593	2	2	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	a0005	593	1	0	1	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	a0006	593	1	0	1	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	a0007	593	1	1	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	a0008	593	1	0	1	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRPEL1_chr4_7053895_7073064	1/1	a0001	217	413	95	80	178	16	42	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	a0002	217	3	0	0	3	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	a0003	217	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	a0004	217	1	0	0	1	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL2_chr5_149340499_149359583	1/1	a0001	225	385	90	66	170	16	41	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	a0002	225	1	0	0	0	0	1	copy fasta	GRPEL2	chr5	149340499	149359583
GRPR_chrX_16118565_16158518	1/1	a0001	384	278	72	56	118	7	23	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	a0002	384	2	2	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	a0003	384	1	0	0	1	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	a0004	384	1	0	0	1	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	a0005	384	1	0	0	0	0	1	copy fasta	GRPR	chrX	16118565	16158518
GRP_chr18_59215158_59235771	0/0	a0001	148	281	72	43	122	14	30	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	1/1	a0002	148	125	20	33	54	2	14	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	a0003	148	1	1	0	0	0	0	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	a0004	148	1	1	0	0	0	0	copy fasta	GRP	chr18	59215158	59235771
GRSF1_chr4_70810783_70844890	0/1	a0001	480	321	84	53	137	10	36	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	1/0	a0002	480	4	3	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	a0003	480	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	a0004	480	1	0	1	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	a0005	480	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRTP1_chr13_113319163_113369130	1/1	a0001	336	265	65	63	87	14	34	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0002	336	5	5	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0003	336	3	0	0	3	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0004	336	3	0	0	3	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0005	336	2	0	2	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0006	336	2	2	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0007	336	2	2	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0008	336	1	1	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0009	336	1	1	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0010	336	1	0	0	0	0	1	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0011	336	1	0	0	0	0	1	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0012	336	1	0	0	1	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	a0013	336	1	0	1	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRWD1_chr19_48440983_48462022	1/0	a0001	446	304	73	42	143	6	39	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/1	a0002	446	78	14	27	30	0	6	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	a0003	445	42	4	5	28	2	3	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	a0004	446	3	1	2	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	a0005	446	2	2	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	a0006	446	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	a0007	446	1	0	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	a0008	446	1	0	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	a0009	446	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	a0010	446	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRXCR1_chr4_42887713_43035658	1/0	a0001	290	216	68	44	75	10	18	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	a0002	290	67	1	13	45	0	8	copy fasta	GRXCR1	chr4	42887713	43035658