JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GSDMA_chr17_39958004_39982768	0/0	a0020	445	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMB_chr17_39899595_39923635	1/1	a0001	416	227	54	30	108	6	27	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0002	416	125	13	33	63	7	9	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0003	416	16	16	0	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0004	416	16	1	6	9	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0005	416	7	0	4	0	3	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0006	416	3	2	0	0	0	1	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0007	416	2	0	2	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0008	401	1	1	0	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0009	416	1	1	0	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0010	146	1	0	0	0	0	1	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	a0011	416	1	0	1	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMC_chr8_129743196_129791624	0/1	a0001	508	272	71	44	130	7	19	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	1/0	a0002	508	117	2	21	67	9	17	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0003	508	8	5	3	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0004	508	3	0	0	3	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0005	508	3	3	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0006	508	3	1	2	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0007	508	2	2	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0008	508	2	0	0	2	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0009	508	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0010	508	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0011	508	1	0	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0012	508	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0013	508	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	a0014	508	1	0	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMD_chr8_143553346_143568062	0/1	a0001	484	391	75	84	173	18	40	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0002	484	5	5	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0003	484	4	0	0	4	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0004	484	3	3	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0005	484	3	3	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0006	484	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0007	484	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0008	484	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0009	484	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0010	484	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0011	484	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0012	484	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0013	484	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0014	484	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0015	484	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	a0016	484	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDME_chr7_24693355_24762464	1/1	a0001	496	279	74	50	109	17	27	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	a0002	496	86	16	6	55	1	8	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	a0003	496	35	1	7	24	0	3	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	a0004	496	2	2	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	a0005	496	2	2	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	a0006	496	2	1	1	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	a0007	496	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	a0008	260	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464