JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GSG1_chr12_13078532_13108667	0/0	a0004	362	3	3	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	a0005	362	2	0	2	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	a0006	362	2	0	0	0	0	2	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	a0007	362	2	0	0	2	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	a0008	362	1	1	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	a0009	223	1	0	1	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	a0010	362	1	0	0	0	0	1	copy fasta	GSG1	chr12	13078532	13108667
GSK3A_chr19_42225190_42247602	1/1	a0001	483	224	58	40	82	6	36	copy fasta	GSK3A	chr19	42225190	42247602
GSK3B_chr3_119816321_120099447	1/1	a0001	420	298	83	35	144	8	26	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	a0002	420	1	1	0	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	a0003	420	1	0	1	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSKIP_chr14_96358526_96392288	1/1	a0001	139	408	94	68	188	14	42	copy fasta	GSKIP	chr14	96358526	96392288
GSN_chr9_121263162_121337842	1/0	a0001	731	242	58	52	98	13	20	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0002	731	47	2	12	28	0	5	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0003	731	8	8	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0004	731	6	3	1	0	0	2	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0005	731	3	2	1	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0006	731	3	3	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/1	a0007	731	2	0	0	1	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0008	731	2	2	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0009	731	2	2	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0010	731	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0011	731	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0012	731	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0013	731	1	0	0	0	1	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0014	731	1	0	0	0	0	1	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0015	731	1	0	0	1	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	a0016	731	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSPT1_chr16_11863128_11920956	0/0	a0001	637	186	45	29	81	3	28	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0002	637	78	16	17	44	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0003	638	36	1	13	16	0	6	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/1	a0004	637	31	4	17	2	2	5	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0005	638	10	7	0	1	0	2	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	1/0	a0006	637	8	7	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0007	637	8	0	1	7	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0008	642	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0009	640	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0010	639	2	0	0	0	0	2	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0011	639	2	1	0	0	1	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0012	637	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0013	641	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0014	637	1	0	1	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0015	640	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0016	637	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	a0017	637	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT2_chrX_51738442_51751232	1/1	a0001	628	305	72	44	146	11	30	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	a0002	628	5	5	0	0	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	a0003	50	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	a0004	627	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSR_chr8_30673066_30732846	1/1	a0001	522	320	77	64	127	13	37	copy fasta	GSR	chr8	30673066	30732846